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Pumpkin Cream Cheese Muffins

Pumpkin cream cheese muffins stacked on top of each other, topped with a cinnamon sugar crumble and filled with creamy cheesecake swirls.

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These Pumpkin Cream Cheese Muffins are moist, bakery-style treats filled with a rich cream cheese center and topped with a buttery crumb. Perfect for fall baking, breakfast, or dessert.

  • Author: Catherine
  • Prep Time: 15 minutes
  • Cook Time: 22 minutes
  • Total Time: 37 minutes
  • Yield: 12–14 muffins
  • Category: Breakfast, Dessert
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Ingredients

  • 1 and 3/4 cups (219g) all-purpose flour
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2 teaspoons ground cinnamon
  • 1 teaspoon pumpkin pie spice
  • 1/2 cup (100g) packed brown sugar
  • 1/2 cup (100g) granulated sugar
  • 2 large eggs, at room temperature
  • 1 cup (227g) canned pumpkin puree
  • 1/2 cup (120ml) vegetable oil
  • 1/3 cup (80ml) milk
  • 1 teaspoon vanilla extract
  • 6 oz (170g) full-fat brick cream cheese, softened
  • 1 egg yolk
  • 1/2 teaspoon vanilla extract (for filling)
  • 3 tablespoons (36g) granulated sugar (for filling)
  • 1/3 cup (67g) packed brown sugar (for topping)
  • 1 teaspoon ground cinnamon (for topping)
  • 1/4 cup (56g) melted unsalted butter (for topping)
  • 2/3 cup (84g) all-purpose flour (for topping)

Instructions

  1. Preheat oven to 425°F (218°C). Line or grease 12–14 muffin cups.
  2. Make crumb topping: Mix brown sugar, cinnamon, and melted butter, then stir in flour until crumbly. Set aside.
  3. Mix dry ingredients: In a large bowl, whisk flour, baking powder, baking soda, salt, cinnamon, and pumpkin pie spice.
  4. Mix wet ingredients: In a medium bowl, whisk eggs, both sugars, pumpkin, oil, milk, and vanilla.
  5. Combine wet and dry: Pour wet mixture into dry and stir until just combined.
  6. Make filling: Beat softened cream cheese until smooth, then mix in egg yolk, sugar, and vanilla.
  7. Assemble muffins: Add 1 heaping tbsp of batter to each cup, then 1 tbsp of filling, then another tbsp of batter. Top with crumb mixture and press gently.
  8. Bake for 5 minutes at 425°F, then reduce to 350°F (177°C) and bake for another 15–17 minutes.
  9. Cool in pan for 10 minutes before serving.

Notes

  • Do not overmix the batter to keep muffins tender.
  • Use full-fat block cream cheese for best results.
  • Store at room temperature for 2 days or refrigerate for 1 week.
  • Freeze for up to 3 months and thaw overnight before serving.
  • Start baking at high heat for domed tops, then lower the temp.